Click the Aligned Seq tab to view the aligned sequence as shown below. (A TBLASTN example is shown.).

Aligned Sequences Tab

Note

In case of TBLASTN, the protein is submitted as a query while the alignment can also be derived offline by running blastx of a genomic sequence vs. a collection of proteins, so that the matching protein can also be a subject. To avoid confusion, a sequence aligned to a genomic sequence is called Aligned Sequence.