Click the Aligned Seq tab to view the aligned sequence as shown below. (A TBLASTN example is shown.).

Aligned Sequences Tab


In case of TBLASTN, the protein is submitted as a query while the alignment can also be derived offline by running blastx of a genomic sequence vs. a collection of proteins, so that the matching protein can also be a subject. To avoid confusion, a sequence aligned to a genomic sequence is called Aligned Sequence.