The Solr indexing can be customized to include or exclude only selected qualifiers. Listing all qualifiers stored in the database may help you with your decision on which qualifiers to include or exclude. To list annotation qualifiers, run the command below without specifying the map set:

PS> list annotation_qualifier
[#]  QUALIFIER                #ENTRIES
-----------------------------------------
[0]  AED                      67,361
[1]  Alias                    88,514
[2]  BedFeatureName           29
[3]  Best-hit-arabi-name      384,057
[4]  Best-hit-rice-name       40,289
[5]  BlastHitAccession        298,923
[6]  Class                    56,213
[7]  Confidence               298,923
[8]  Dbxref                   1,645,610
[9]  Description              240,286
[10]  Function description     298,952
...
[267]  ribosomal_slippage       8
[268]  rice-defline             40,289
[269]  tag                      19,197
[270]  transcriptID             46,678
[271]  transcriptId             339,558
[272]  transcriptName           1,117,293
[273]  transcript_id            2,423,055
[274]  unknowns                 1,262

Type the line [number] to print all map sets where the selected qualifier is used (ENTER to skip):

To see example values of a qualifier, type the corresponding line number:

Type the line [number] to print all map sets where the selected qualifier is used (ENTER to skip): 219
Qualifier Synonym:

MAP_SET_ID  ACCESSION      #ENTRIES  EXAMPLE
------------------------------------------------------
17          Sorghum v.3.1  31,930    Sb0019s003400
19          Wm82.a2.v1     77,902    Glyma0002s50
27          SL3.0          35,768    Solyc00g005000
34          Wm82.a4.v1     72,921    Glyma.01G103700

Now you can see if the qualifier contains the values worth searching for using the Solr index. To list all distinct values for a qualifier, run the list command providing MapSetId:

PS> list annotation_qualifier 17
Annotation qualifiers with example values for map set:/Sorghum bicolor/Sorghum v.3.1Track 'PHYTOZOME12 gene models':

[0] Best-hit-arabi-name ( 37,061 records) : AT1G01020.1
[1]  Best-hit-rice-name ( 40,289 records) : ChrSy.fgenesh.mRNA.22
[2]                Name ( 40,698 records) : Sobic.001G000100.1
[3]             Panther ( 38,600 records) : PTHR10000,PTHR10000:SF13
[4]                Pfam ( 33,186 records) : PF00004
[5]             Synonym ( 31,930 records) : Sb0019s003400
[6]       arabi-defline ( 34,186 records) : 1,2-alpha-L-fucosidases
[7]               pacid ( 40,698 records) : 37908432
[8]        rice-defline ( 40,289 records) : 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed

Type the line [number] to print all values for selected qualifier (ENTER to skip): 5
All distinct values for qualifier 'Synonym':
Sb01g000200
Sb01g000210
Sb01g000220
...
...Printout interrupted...
Total: 31,930 values, (22,212 distinct)